WO2003062445A3 - Real-time linear detection probes: sensitive 5'-minor groove binder-containing probes for pcr analysis - Google Patents

Real-time linear detection probes: sensitive 5'-minor groove binder-containing probes for pcr analysis Download PDF

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Publication number
WO2003062445A3
WO2003062445A3 PCT/US2002/039564 US0239564W WO03062445A3 WO 2003062445 A3 WO2003062445 A3 WO 2003062445A3 US 0239564 W US0239564 W US 0239564W WO 03062445 A3 WO03062445 A3 WO 03062445A3
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WIPO (PCT)
Prior art keywords
probes
sensitive
real
pcr analysis
minor groove
Prior art date
Application number
PCT/US2002/039564
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French (fr)
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WO2003062445A2 (en
Inventor
Yevgeniy S Belousov
Irina A Afonina
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Epoch Biosciences Inc
Yevgeniy S Belousov
Irina A Afonina
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Application filed by Epoch Biosciences Inc, Yevgeniy S Belousov, Irina A Afonina filed Critical Epoch Biosciences Inc
Priority to EP02787009A priority Critical patent/EP1468112A4/en
Priority to CA002473960A priority patent/CA2473960A1/en
Priority to JP2003562312A priority patent/JP2006511191A/en
Publication of WO2003062445A2 publication Critical patent/WO2003062445A2/en
Publication of WO2003062445A3 publication Critical patent/WO2003062445A3/en

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    • C07C245/00—Compounds containing chains of at least two nitrogen atoms with at least one nitrogen-to-nitrogen multiple bond
    • C07C245/02—Azo compounds, i.e. compounds having the free valencies of —N=N— groups attached to different atoms, e.g. diazohydroxides
    • C07C245/06—Azo compounds, i.e. compounds having the free valencies of —N=N— groups attached to different atoms, e.g. diazohydroxides with nitrogen atoms of azo groups bound to carbon atoms of six-membered aromatic rings
    • C07C245/08—Azo compounds, i.e. compounds having the free valencies of —N=N— groups attached to different atoms, e.g. diazohydroxides with nitrogen atoms of azo groups bound to carbon atoms of six-membered aromatic rings with the two nitrogen atoms of azo groups bound to carbon atoms of six-membered aromatic rings, e.g. azobenzene
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    • C07D—HETEROCYCLIC COMPOUNDS
    • C07D519/00—Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups C07D453/00 or C07D455/00
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
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    • C07F9/00—Compounds containing elements of Groups 5 or 15 of the Periodic System
    • C07F9/02—Phosphorus compounds
    • C07F9/06—Phosphorus compounds without P—C bonds
    • C07F9/22—Amides of acids of phosphorus
    • C07F9/24—Esteramides
    • C07F9/2404—Esteramides the ester moiety containing a substituent or a structure which is considered as characteristic
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    • C07—ORGANIC CHEMISTRY
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    • C07F9/00—Compounds containing elements of Groups 5 or 15 of the Periodic System
    • C07F9/02—Phosphorus compounds
    • C07F9/547—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom
    • C07F9/553—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom having one nitrogen atom as the only ring hetero atom
    • C07F9/572—Five-membered rings
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07F—ACYCLIC, CARBOCYCLIC OR HETEROCYCLIC COMPOUNDS CONTAINING ELEMENTS OTHER THAN CARBON, HYDROGEN, HALOGEN, OXYGEN, NITROGEN, SULFUR, SELENIUM OR TELLURIUM
    • C07F9/00—Compounds containing elements of Groups 5 or 15 of the Periodic System
    • C07F9/02—Phosphorus compounds
    • C07F9/547—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom
    • C07F9/655—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom having oxygen atoms, with or without sulfur, selenium, or tellurium atoms, as the only ring hetero atoms
    • C07F9/6552—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom having oxygen atoms, with or without sulfur, selenium, or tellurium atoms, as the only ring hetero atoms the oxygen atom being part of a six-membered ring
    • C07F9/65522—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom having oxygen atoms, with or without sulfur, selenium, or tellurium atoms, as the only ring hetero atoms the oxygen atom being part of a six-membered ring condensed with carbocyclic rings or carbocyclic ring systems
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    • C07—ORGANIC CHEMISTRY
    • C07F—ACYCLIC, CARBOCYCLIC OR HETEROCYCLIC COMPOUNDS CONTAINING ELEMENTS OTHER THAN CARBON, HYDROGEN, HALOGEN, OXYGEN, NITROGEN, SULFUR, SELENIUM OR TELLURIUM
    • C07F9/00—Compounds containing elements of Groups 5 or 15 of the Periodic System
    • C07F9/02—Phosphorus compounds
    • C07F9/547—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom
    • C07F9/6561—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom containing systems of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring or ring system, with or without other non-condensed hetero rings
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    • C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
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    • C09B29/00—Monoazo dyes prepared by diazotising and coupling
    • C09B29/06—Monoazo dyes prepared by diazotising and coupling from coupling components containing amino as the only directing group
    • C09B29/08—Amino benzenes
    • C09B29/0805—Amino benzenes free of acid groups
    • C09B29/0807—Amino benzenes free of acid groups characterised by the amino group
    • C09B29/0809—Amino benzenes free of acid groups characterised by the amino group substituted amino group
    • C09B29/0811—Amino benzenes free of acid groups characterised by the amino group substituted amino group further substituted alkylamino, alkenylamino, alkynylamino, cycloalkylamino aralkylamino or arylamino
    • C09B29/0813—Amino benzenes free of acid groups characterised by the amino group substituted amino group further substituted alkylamino, alkenylamino, alkynylamino, cycloalkylamino aralkylamino or arylamino substituted by OH, O-C(=X)-R, O-C(=X)-X-R, O-R (X being O,S,NR; R being hydrocarbonyl)
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    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
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    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/686—Polymerase chain reaction [PCR]
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Abstract

Oligonucleotide probes/conjugates are provided along with method for their use in assays to monitor amplification wherein the signal produced does not rely on 5' nuclease digestion.
PCT/US2002/039564 2002-01-23 2002-12-10 Real-time linear detection probes: sensitive 5'-minor groove binder-containing probes for pcr analysis WO2003062445A2 (en)

Priority Applications (3)

Application Number Priority Date Filing Date Title
EP02787009A EP1468112A4 (en) 2002-01-23 2002-12-10 Real-time linear detection probes: sensitive 5'-minor groove binder-containing probes for pcr analysis
CA002473960A CA2473960A1 (en) 2002-01-23 2002-12-10 Real-time linear detection probes: sensitive 5'-minor groove binder-containing probes for pcr analysis
JP2003562312A JP2006511191A (en) 2002-01-23 2002-12-10 Real-time linear detection probe: Sensitive probe for PCR analysis containing 5'-minor groove binder

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US35163702P 2002-01-23 2002-01-23
US60/351,637 2002-01-23
US10/165,410 US7205105B2 (en) 1999-12-08 2002-06-06 Real-time linear detection probes: sensitive 5′-minor groove binder-containing probes for PCR analysis
US10/165,410 2002-06-06

Publications (2)

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WO2003062445A2 WO2003062445A2 (en) 2003-07-31
WO2003062445A3 true WO2003062445A3 (en) 2003-09-18

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US (2) US7205105B2 (en)
EP (1) EP1468112A4 (en)
JP (1) JP2006511191A (en)
CA (1) CA2473960A1 (en)
WO (1) WO2003062445A2 (en)

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US20070003957A1 (en) 2007-01-04
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US20030175728A1 (en) 2003-09-18
US7205105B2 (en) 2007-04-17
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CA2473960A1 (en) 2003-07-31
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