WO2002061121A3 - Methods of analysis of nucleic acids - Google Patents

Methods of analysis of nucleic acids Download PDF

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Publication number
WO2002061121A3
WO2002061121A3 PCT/EP2002/000868 EP0200868W WO02061121A3 WO 2002061121 A3 WO2002061121 A3 WO 2002061121A3 EP 0200868 W EP0200868 W EP 0200868W WO 02061121 A3 WO02061121 A3 WO 02061121A3
Authority
WO
WIPO (PCT)
Prior art keywords
methods
analysis
nucleic acids
single nucleotide
nucleotide polymorphism
Prior art date
Application number
PCT/EP2002/000868
Other languages
French (fr)
Other versions
WO2002061121A2 (en
Inventor
Christopher A Hinkel
William J Kimmerly
Li Yang
Original Assignee
Syngenta Participations Ag
Christopher A Hinkel
William J Kimmerly
Li Yang
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Syngenta Participations Ag, Christopher A Hinkel, William J Kimmerly, Li Yang filed Critical Syngenta Participations Ag
Priority to JP2002561056A priority Critical patent/JP2004529618A/en
Priority to CA002436428A priority patent/CA2436428A1/en
Priority to AU2002250863A priority patent/AU2002250863B2/en
Priority to EP02719736A priority patent/EP1381695A2/en
Publication of WO2002061121A2 publication Critical patent/WO2002061121A2/en
Publication of WO2002061121A3 publication Critical patent/WO2002061121A3/en

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase

Abstract

Methods are provided for the multiplex analysis of polynucleotide expression and single nucleotide polymorphism detection using capture probes coupled to uniquely identified particles. The methods provided are characterized by high flexibility and high throughput.
PCT/EP2002/000868 2001-01-29 2002-01-28 Methods of analysis of nucleic acids WO2002061121A2 (en)

Priority Applications (4)

Application Number Priority Date Filing Date Title
JP2002561056A JP2004529618A (en) 2001-01-29 2002-01-28 Methods of nucleic acid analysis
CA002436428A CA2436428A1 (en) 2001-01-29 2002-01-28 Methods of analysis of nucleic acids
AU2002250863A AU2002250863B2 (en) 2001-01-29 2002-01-28 Methods of analysis of nucleic acids
EP02719736A EP1381695A2 (en) 2001-01-29 2002-01-28 Methods of analysis of nucleic acids

Applications Claiming Priority (6)

Application Number Priority Date Filing Date Title
US26497201P 2001-01-29 2001-01-29
US60/264,972 2001-01-29
US26618601P 2001-02-02 2001-02-02
US60/266,186 2001-02-02
US29598601P 2001-06-04 2001-06-04
US60/295,986 2001-06-04

Publications (2)

Publication Number Publication Date
WO2002061121A2 WO2002061121A2 (en) 2002-08-08
WO2002061121A3 true WO2002061121A3 (en) 2003-11-20

Family

ID=27401751

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/EP2002/000868 WO2002061121A2 (en) 2001-01-29 2002-01-28 Methods of analysis of nucleic acids

Country Status (6)

Country Link
US (1) US20030165865A1 (en)
EP (1) EP1381695A2 (en)
JP (1) JP2004529618A (en)
AU (1) AU2002250863B2 (en)
CA (1) CA2436428A1 (en)
WO (1) WO2002061121A2 (en)

Cited By (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US8691754B2 (en) 2003-09-22 2014-04-08 Bioarray Solutions, Ltd. Microparticles with enhanced covalent binding capacity and their uses
US8691594B2 (en) 1996-04-25 2014-04-08 Bioarray Solutions, Ltd. Method of making a microbead array with attached biomolecules
US9147037B2 (en) 2004-08-02 2015-09-29 Bioarray Solutions, Ltd. Automated analysis of multiplexed probe-target interaction patterns: pattern matching and allele identification
US9251583B2 (en) 2002-11-15 2016-02-02 Bioarray Solutions, Ltd. Analysis, secure access to, and transmission of array images
US9436088B2 (en) 2001-06-21 2016-09-06 Bioarray Solutions, Ltd. Un-supported polymeric film with embedded microbeads

Families Citing this family (20)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US9709559B2 (en) 2000-06-21 2017-07-18 Bioarray Solutions, Ltd. Multianalyte molecular analysis using application-specific random particle arrays
KR20040068122A (en) 2001-10-15 2004-07-30 바이오어레이 솔루션스 리미티드 Multiplexed analysis of polymorphic loci by concurrent interrogation and enzyme-mediated detection
US20030165859A1 (en) 2001-10-23 2003-09-04 Invitrogen Corporation Primers and methods for the detection and discrimination of nucleic acids
US7157228B2 (en) 2002-09-09 2007-01-02 Bioarray Solutions Ltd. Genetic analysis and authentication
US20040157238A1 (en) * 2002-09-20 2004-08-12 Quinn John J. Method for detection of multiple nucleic acid sequence variations
DE10323901A1 (en) * 2003-05-26 2005-01-05 Institut Virion/Serion Gmbh Method and test means for the examination and / or detection of biomolecules and / or active substances in liquid samples
AU2004286252A1 (en) 2003-10-28 2005-05-12 Bioarray Solutions Ltd. Optimization of gene expression analysis using immobilized capture probes
JP4518784B2 (en) * 2003-12-01 2010-08-04 Ｇ＆Ｇサイエンス株式会社 New genotyping method
WO2006065732A2 (en) * 2004-12-13 2006-06-22 Autogenomics, Inc. Compositions and methods for nucleic acid analysis of sequences with insertions or deletions
CN101248191A (en) * 2005-07-06 2008-08-20 生物芯片创新控股有限公司 Method and kit for analyzing a target nucleic acid sequence
WO2007022530A2 (en) * 2005-08-16 2007-02-22 The Children's Mercy Hospital Quantification of microsphere suspension hybridization and uses thereof
US7807359B2 (en) * 2006-12-01 2010-10-05 Quest Diagnostics Investments Incorporated Methods of detecting TPMT mutations
JP4370385B2 (en) * 2007-03-09 2009-11-25 独立行政法人理化学研究所 Primer, primer set, nucleic acid amplification method and mutation detection method using the same
CA2622649C (en) 2007-03-09 2018-04-24 Riken Nucleic acid amplification method using primer exhibiting exciton effect
EP2130835B1 (en) 2007-03-09 2012-05-23 Riken Compound having structure derived from mononucleoside or mononucleotide, nucleic acid, labeling substance, and method and kit for detection of nucleic acid
AU2008247686B2 (en) 2007-05-03 2012-08-30 One Lambda, Inc. Methods of screening for binding interaction using sets of microparticles and unique probes
AU2008301233A1 (en) * 2007-09-20 2009-03-26 Molecular Plant Breeding Nominees Ltd Method of amplifying nucleic acid
US8039794B2 (en) 2008-12-16 2011-10-18 Quest Diagnostics Investments Incorporated Mass spectrometry assay for thiopurine-S-methyl transferase activity and products generated thereby
MX2017015093A (en) * 2011-01-11 2023-03-10 Seegene Inc Detection of target nucleic acid sequences by pto cleavage and extension assay.
CN114958986A (en) * 2022-06-14 2022-08-30 武汉市景肽生物科技有限公司 Identification method for gene polymorphism typing and application thereof

Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1993025563A1 (en) * 1992-06-17 1993-12-23 City Of Hope A method of detecting and discriminating between nucleic acid sequences
WO1998014610A2 (en) * 1996-10-04 1998-04-09 The Perkin-Elmer Corporation Multiplex polynucleotide capture methods and compositions
WO1999037814A1 (en) * 1998-01-22 1999-07-29 Luminex Corporation Microparticles with multiple fluorescent signals
EP0962536A1 (en) * 1998-06-04 1999-12-08 Roche Diagnostics GmbH DNA detection by a strand reassociation complex
WO2000047767A1 (en) * 1999-02-11 2000-08-17 Astrazeneca Ab Oligonucleotide array and methods of use

Family Cites Families (18)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP0317239A3 (en) * 1987-11-13 1990-01-17 Native Plants Incorporated Method and device for improved restriction fragment length polymorphism analysis
US5639611A (en) * 1988-12-12 1997-06-17 City Of Hope Allele specific polymerase chain reaction
US6013431A (en) * 1990-02-16 2000-01-11 Molecular Tool, Inc. Method for determining specific nucleotide variations by primer extension in the presence of mixture of labeled nucleotides and terminators
US5494810A (en) * 1990-05-03 1996-02-27 Cornell Research Foundation, Inc. Thermostable ligase-mediated DNA amplifications system for the detection of genetic disease
US5846710A (en) * 1990-11-02 1998-12-08 St. Louis University Method for the detection of genetic diseases and gene sequence variations by single nucleotide primer extension
US5888819A (en) * 1991-03-05 1999-03-30 Molecular Tool, Inc. Method for determining nucleotide identity through primer extension
US5459037A (en) * 1993-11-12 1995-10-17 The Scripps Research Institute Method for simultaneous identification of differentially expressed mRNAs and measurement of relative concentrations
US5925517A (en) * 1993-11-12 1999-07-20 The Public Health Research Institute Of The City Of New York, Inc. Detectably labeled dual conformation oligonucleotide probes, assays and kits
US5834181A (en) * 1994-07-28 1998-11-10 Genzyme Corporation High throughput screening method for sequences or genetic alterations in nucleic acids
GB9507238D0 (en) * 1995-04-07 1995-05-31 Isis Innovation Detecting dna sequence variations
US5712126A (en) * 1995-08-01 1998-01-27 Yale University Analysis of gene expression by display of 3-end restriction fragments of CDNA
US5866330A (en) * 1995-09-12 1999-02-02 The Johns Hopkins University School Of Medicine Method for serial analysis of gene expression
US5695937A (en) * 1995-09-12 1997-12-09 The Johns Hopkins University School Of Medicine Method for serial analysis of gene expression
US5871697A (en) * 1995-10-24 1999-02-16 Curagen Corporation Method and apparatus for identifying, classifying, or quantifying DNA sequences in a sample without sequencing
US5945283A (en) * 1995-12-18 1999-08-31 Washington University Methods and kits for nucleic acid analysis using fluorescence resonance energy transfer
US5645995A (en) * 1996-04-12 1997-07-08 Baylor College Of Medicine Methods for diagnosing an increased risk for breast or ovarian cancer
US6287778B1 (en) * 1999-10-19 2001-09-11 Affymetrix, Inc. Allele detection using primer extension with sequence-coded identity tags
WO2001083823A1 (en) * 2000-04-28 2001-11-08 Quantum Dot Corporation Methods and compositions for polynucleotide analysis using generic capture sequences

Patent Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1993025563A1 (en) * 1992-06-17 1993-12-23 City Of Hope A method of detecting and discriminating between nucleic acid sequences
WO1998014610A2 (en) * 1996-10-04 1998-04-09 The Perkin-Elmer Corporation Multiplex polynucleotide capture methods and compositions
WO1999037814A1 (en) * 1998-01-22 1999-07-29 Luminex Corporation Microparticles with multiple fluorescent signals
EP0962536A1 (en) * 1998-06-04 1999-12-08 Roche Diagnostics GmbH DNA detection by a strand reassociation complex
WO2000047767A1 (en) * 1999-02-11 2000-08-17 Astrazeneca Ab Oligonucleotide array and methods of use

Cited By (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US8691594B2 (en) 1996-04-25 2014-04-08 Bioarray Solutions, Ltd. Method of making a microbead array with attached biomolecules
US9400259B2 (en) 1996-04-25 2016-07-26 Bioarray Solutions, Ltd. Method of making a microbead array with attached biomolecules
US9436088B2 (en) 2001-06-21 2016-09-06 Bioarray Solutions, Ltd. Un-supported polymeric film with embedded microbeads
US9251583B2 (en) 2002-11-15 2016-02-02 Bioarray Solutions, Ltd. Analysis, secure access to, and transmission of array images
US8691754B2 (en) 2003-09-22 2014-04-08 Bioarray Solutions, Ltd. Microparticles with enhanced covalent binding capacity and their uses
US9147037B2 (en) 2004-08-02 2015-09-29 Bioarray Solutions, Ltd. Automated analysis of multiplexed probe-target interaction patterns: pattern matching and allele identification

Also Published As

Publication number Publication date
EP1381695A2 (en) 2004-01-21
JP2004529618A (en) 2004-09-30
CA2436428A1 (en) 2002-08-08
US20030165865A1 (en) 2003-09-04
WO2002061121A2 (en) 2002-08-08
AU2002250863B2 (en) 2006-09-14

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